STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_02115-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rha:RHA1_ro04906 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Noca_0210
PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase.
 
 
 0.810
Noca_0209
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_B1413 acyl-CoA dehydrogenase-like.
  
  
 0.763
Noca_0208
PFAM: alpha/beta hydrolase fold; KEGG: ttj:TTHB237 2-hydroxymuconic semialdehyde hydrolase.
  
 
 0.681
Noca_0207
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.668
Noca_0657
PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: rha:RHA1_ro02311 homogentisate 1,2-dioxygenase.
  
  
 0.663
Noca_0206
PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: nfa:nfa33590 hypothetical protein.
  
  
 0.650
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: tfu:Tfu_2051 argininosuccinate lyase.
 
  
 0.475
Noca_3207
PFAM: isochorismatase hydrolase; KEGG: eca:ECA2383 putative isochorismatase.
  
   0.475
Noca_0205
RNAse Z; KEGG: rme:Rmet_5998 hypothetical protein.
       0.451
Noca_0204
2,3-dimethylmalate lyase; KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase.
 
  
 0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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