Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0224TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mmc:Mmcs_0491 carbon-monoxide dehydrogenase, large subunit. (791 aa)    
Predicted Functional Partners:
Noca_0223
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro05231 possible carbon monoxide dehydrogenase.
 
 0.970
Noca_0222
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: mtc:MT0390 carbon monoxide dehydrogenase, medium subunit, putative.
 
 
 0.969
Noca_0229
Carbon monoxide dehydrogenase, small subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein.
 
 0.947
Noca_0228
PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mmc:Mmcs_0489 carbon-monoxide dehydrogenase.
 
 
 0.933
Noca_3970
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro04977 carbon monoxide dehydrogenase small subunit (ferredoxin).
 
 0.900
Noca_0231
PFAM: protein of unknown function DUF182; YHS domain protein; SMART: TRASH domain protein; KEGG: rha:RHA1_ro05233 hypothetical protein.
 
  
 0.892
Noca_1489
Carbon-monoxide dehydrogenase (acceptor); PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03491 dehydrogenase.
 
 
 0.877
Noca_0607
PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding.
 
 
 0.876
Noca_0226
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mbo:Mb0384 probable transcriptional regulatory protein (probably LysR-family).
 
    0.870
Noca_0225
KEGG: mbo:Mb0378c hypothetical protein.
 
   
 0.866
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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