STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0231PFAM: protein of unknown function DUF182; YHS domain protein; SMART: TRASH domain protein; KEGG: rha:RHA1_ro05233 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Noca_0228
PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: mmc:Mmcs_0489 carbon-monoxide dehydrogenase.
 
  
 0.956
Noca_0230
Xanthine dehydrogenase, molybdenum binding subunit apoprotein; KEGG: rha:RHA1_ro05232 possible carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.953
Noca_0229
Carbon monoxide dehydrogenase, small subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein.
 
  
 0.937
Noca_0225
KEGG: mbo:Mb0378c hypothetical protein.
 
  
 0.896
Noca_0223
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro05231 possible carbon monoxide dehydrogenase.
 
  
 0.894
Noca_0224
TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mmc:Mmcs_0491 carbon-monoxide dehydrogenase, large subunit.
 
  
 0.891
Noca_0222
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: mtc:MT0390 carbon monoxide dehydrogenase, medium subunit, putative.
 
  
 0.882
Noca_0232
PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro05235 hypothetical protein.
 
     0.864
Noca_0233
Hypothetical protein.
       0.807
Noca_0227
Hypothetical protein.
       0.786
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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