Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0243TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: tfu:Tfu_0970 NADPH-dependent F420 reductase. (225 aa)    
Predicted Functional Partners:
Noca_0242
PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_0069 putative transcriptional regulator.
       0.603
Noca_1409
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: tfu:Tfu_2518 hypothetical protein.
 
     0.554
Noca_1410
LPPG:FO 2-phospho-L-lactate transferase; TIGRFAM: LPPG; PFAM: protein of unknown function UPF0052 and CofD; KEGG: sco:SCO3036 LPPG:FO 2-phopspho-L-lactate transferase.
 
     0.509
Noca_0241
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: tfu:Tfu_0068 putative acyl-CoA dehydrogenase.
       0.448
Noca_0244
Hypothetical protein.
       0.434
Noca_1736
KEGG: tfu:Tfu_0565 hypothetical protein.
  
     0.422
Noca_1630
Methylenetetrahydromethanopterin reductase; PFAM: luciferase family protein; KEGG: hma:pNG7255 F420-dependent N5,N10-methylene-tetrahydromethanopterin reductase.
 
    0.421
Noca_4065
PFAM: luciferase family protein; KEGG: mmc:Mmcs_3213 luciferase-like protein.
 
    0.420
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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