STRINGSTRING
Noca_0285 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0285" - Putative DNA-binding protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0285Putative DNA-binding protein (68 aa)    
Predicted Functional Partners:
Noca_0283
Hypothetical protein (109 aa)
   
          0.644
Noca_3512
Membrane-flanked domain-containing protein (491 aa)
   
          0.586
Noca_3085
Hypothetical protein (140 aa)
   
          0.539
Noca_0284
Signal-transduction protein (68 aa)
 
       
0.519
Noca_1464
Hypothetical protein (215 aa)
   
          0.515
Noca_4290
ATPase domain-containing protein (315 aa)
   
          0.513
Noca_3511
Membrane-flanked domain-containing protein (165 aa)
   
          0.498
Noca_4231
Hypothetical protein (161 aa)
   
          0.427
pup
Hypothetical protein; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation (65 aa)
   
          0.425
Noca_2173
Regulatory protein TetR (200 aa)
   
          0.423
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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