STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0285KEGG: sco:SCO0174 putative DNA-binding protein. (68 aa)    
Predicted Functional Partners:
Noca_0283
KEGG: rha:RHA1_ro00038 hypothetical protein.
  
     0.665
Noca_0988
PFAM: UspA domain protein; KEGG: tfu:Tfu_3032 hypothetical protein.
 
  
 0.526
Noca_1005
PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein.
 
  
 0.512
Noca_0284
KEGG: fra:Francci3_4502 putative signal-transduction protein with CBS domains.
 
    
0.468
Noca_0997
PFAM: UspA domain protein; KEGG: rha:RHA1_ro02263 possible universal stress protein.
 
  
 0.467
Noca_0996
PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein.
 
  
 0.439
Noca_0995
KEGG: fra:Francci3_1002 hypothetical protein.
  
    0.413
Noca_4547
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL5043 putative methyltransferase (partial match).
  
     0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.