STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0307TIGRFAM: CD9/CD37/CD63 antigen; KEGG: sma:SAV2527 hypothetical protein. (451 aa)    
Predicted Functional Partners:
Noca_0303
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: sco:SCO5734 ATP/GTP binding protein (membrane protein).
 
 
 0.993
Noca_0308
KEGG: fal:FRAAL2961 hypothetical protein.
 
 
 0.965
Noca_0306
PFAM: protein of unknown function DUF909; KEGG: cgb:cg0672 hypothetical protein; Belongs to the WXG100 family.
 
  
 0.919
Noca_0309
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: mmc:Mmcs_0380 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
  
 0.877
Noca_0305
Hypothetical protein; Belongs to the WXG100 family.
  
  
 0.712
Noca_0488
KEGG: sma:SAV4734 hypothetical protein.
  
     0.689
Noca_4290
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein.
  
    0.683
Noca_2317
PFAM: cell divisionFtsK/SpoIIIE; KEGG: pac:PPA1356 FtsK/SpoIIIE protein.
  
 
 0.676
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
     0.669
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
  
     0.657
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.