STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0316PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein. (517 aa)    
Predicted Functional Partners:
Noca_3979
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein.
 
     0.754
Noca_1910
Hypothetical protein; KEGG: sus:Acid_2373 calcium-binding EF-hand-containing protein.
   
 
 0.638
Noca_3135
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor; PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
   
 
 0.618
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.558
Noca_1871
PFAM: cytochrome P450; KEGG: eba:ebA6767 hypothetical heme-thiolate monooxygenase.
  
   
 0.510
Noca_2933
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Polysulphide reductase, NrfD; KEGG: rha:RHA1_ro11226 probable polysulphide reductase.
  
  
 0.469
Noca_4302
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sso:SSO1764 hypothetical protein.
  
     0.454
Noca_1143
PFAM: Transthyretin; KEGG: nfa:nfa52430 hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
   0.442
Noca_2214
KEGG: pfl:PFL_2399 hypothetical protein.
  
     0.426
Noca_0410
KEGG: xom:XOO_4078 hypothetical protein.
  
     0.425
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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