Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
whiBTranscription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (103 aa)    
Predicted Functional Partners:
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.774
Noca_3252
KEGG: sma:SAV2634 hypothetical protein.
  
     0.740
Noca_1290
KEGG: pac:PPA1685 hypothetical protein.
  
     0.712
Noca_2710
SMART: regulatory protein, MerR; KEGG: pac:PPA1087 predicted transcriptional regulator.
  
   
 0.696
Noca_0500
PFAM: Phosphoglycerate mutase; KEGG: sma:SAV4796 phosphoglycerate mutase.
  
     0.686
Noca_0326
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA.
     
 0.638
Noca_0930
PFAM: protein of unknown function DUF501; KEGG: sma:SAV3531 hypothetical protein.
 
     0.590
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.584
Noca_2911
KEGG: sma:SAV2403 hypothetical protein.
  
     0.577
Noca_0008
KEGG: sma:SAV4323 hypothetical protein.
  
     0.562
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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