STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0335KEGG: fra:Francci3_4281 hypothetical protein. (51 aa)    
Predicted Functional Partners:
Noca_0336
PFAM: Endoribonuclease L-PSP; KEGG: sco:SCO3575 hypothetical protein.
  
    0.860
Noca_0337
PFAM: NUDIX hydrolase; KEGG: sma:SAV4589 hypothetical protein.
       0.827
Noca_0338
PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase.
       0.718
Noca_0334
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor.
       0.513
Noca_1520
KEGG: fra:Francci3_1839 hypothetical protein.
  
     0.476
Noca_2916
KEGG: sma:SAV2411 DNA-binding protein.
  
     0.474
Noca_0465
KEGG: pac:PPA0277 hypothetical protein.
  
     0.472
Noca_0324
PFAM: metallophosphoesterase; KEGG: mmc:Mmcs_4826 metallophosphoesterase.
 
     0.450
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
     0.409
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.