STRINGSTRING
Noca_0335 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0335" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0335Hypothetical protein (51 aa)    
Predicted Functional Partners:
Noca_0336
Endoribonuclease L-PSP (154 aa)
              0.912
Noca_0337
NUDIX hydrolase (290 aa)
 
          0.906
Noca_0338
Beta-lactamase domain-containing protein (255 aa)
              0.773
Noca_0327
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (103 aa)
 
          0.764
Noca_0324
Metallophosphoesterase (320 aa)
 
          0.753
Noca_0005
Hypothetical protein (188 aa)
   
          0.690
Noca_1900
Hypothetical protein (287 aa)
   
          0.616
Noca_4320
Hypothetical protein (119 aa)
   
          0.593
Noca_0334
FliA/WhiG family RNA polymerase sigma factor (300 aa)
              0.578
Noca_3671
Chlorite dismutase (240 aa)
   
          0.524
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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