STRINGSTRING
Noca_0336 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0336" - Endoribonuclease L-PSP in Nocardioides sp. JS614
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0336Endoribonuclease L-PSP (154 aa)    
Predicted Functional Partners:
Noca_0335
Hypothetical protein (51 aa)
              0.912
Noca_0337
NUDIX hydrolase (290 aa)
   
        0.872
Noca_0338
Beta-lactamase domain-containing protein (255 aa)
   
        0.797
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (242 aa)
       
    0.662
Noca_4599
Elongation factor G (701 aa)
     
  0.590
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (703 aa)
     
  0.590
Noca_0334
FliA/WhiG family RNA polymerase sigma factor (300 aa)
         
  0.584
Noca_4626
Methylmalonate-semialdehyde dehydrogenase (498 aa)
   
  0.547
Noca_4598
Succinate semialdehyde dehydrogenase (485 aa)
   
  0.547
Noca_4493
Phenylacetic acid degradation protein paaN (557 aa)
   
  0.547
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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