STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0337PFAM: NUDIX hydrolase; KEGG: sma:SAV4589 hypothetical protein. (290 aa)    
Predicted Functional Partners:
Noca_0338
PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase.
     0.930
Noca_0335
KEGG: fra:Francci3_4281 hypothetical protein.
       0.827
Noca_0336
PFAM: Endoribonuclease L-PSP; KEGG: sco:SCO3575 hypothetical protein.
  
    0.804
Noca_0328
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: tfu:Tfu_0111 putative ion-transporting ATPase; TC 3.A.4.1.1.
 
   
 0.509
Noca_0334
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor.
       0.504
Noca_1707
KEGG: tfu:Tfu_0549 anti-sigma factor.
 
     0.499
Noca_0329
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: sco:SCO3577 ion-transporting ATPase; TC 3.A.4.1.1.
 
   
 0.485
Noca_0618
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMa0257 probable methylamine.
  
 0.441
Noca_3036
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY4468 hypothetical protein.
   
 0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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