Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0338PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase. (255 aa)    
Predicted Functional Partners:
Noca_0337
PFAM: NUDIX hydrolase; KEGG: sma:SAV4589 hypothetical protein.
     0.921
Noca_0336
PFAM: Endoribonuclease L-PSP; KEGG: sco:SCO3575 hypothetical protein.
  
    0.715
Noca_0335
KEGG: fra:Francci3_4281 hypothetical protein.
       0.680
Noca_2522
PFAM: beta-lactamase domain protein; KEGG: fra:Francci3_1630 beta-lactamase-like.
  
     0.507
Noca_2930
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase.
 
 
 0.446
Noca_3650
PFAM: beta-lactamase domain protein; KEGG: sco:SCO0740 hydrolase.
  
     0.430
Noca_2937
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11243 hypothetical protein.
 
 
 0.409
Noca_0334
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lxx:Lxx06230 RNA polymerase, sigma factor.
       0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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