STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0341PFAM: Redoxin domain protein; KEGG: pac:PPA0224 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Noca_0343
PFAM: peptidase S1 and S6, chymotrypsin/Hap; Colicin V production protein; KEGG: fra:Francci3_4292 colicin V production protein.
   
 
 0.839
nth
Endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
    0.821
Noca_0342
PFAM: NUDIX hydrolase; KEGG: sma:SAV4594 hypothetical protein.
       0.808
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.710
Noca_0502
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sco:SCO4473 putative cytochrome biogenesis related protein.
 
  
 0.638
Noca_1951
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ade:Adeh_2146 cytochrome c biogenesis protein.
 
  
 0.638
Noca_2199
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein.
 
  
 0.638
Noca_3024
PFAM: electron transport protein SCO1/SenC; KEGG: fra:Francci3_2499 electron transport protein SCO1/SenC.
 
 
 0.624
Noca_1958
PFAM: cytochrome c assembly protein; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF.
 
  
 0.590
Noca_0339
PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding:bacterial regulatory protein, Crp.
     
 0.578
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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