STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0344PFAM: protein of unknown function DUF1469; KEGG: cdi:DIP0309 hypothetical protein. (139 aa)    
Predicted Functional Partners:
nhaA1
Sodium/proton antiporter, NhaA family; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
       0.796
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.618
Noca_3520
KEGG: rha:RHA1_ro05202 hypothetical protein.
  
     0.505
Noca_0246
KEGG: sco:SCO0502 hypothetical protein.
  
     0.492
Noca_0354
PFAM: transcriptional regulator domain protein; Uroporphyrinogen III synthase HEM4; KEGG: sco:SCO2958 uroporphyrinogen-III synthetase.
  
    0.448
Noca_2180
KEGG: sco:SCO0502 hypothetical protein.
  
     0.448
Noca_4059
KEGG: cch:Cag_1235 hypothetical protein.
  
     0.443
Noca_1336
TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: rha:RHA1_ro02920 tRNA processing ribonuclease BN.
 
     0.435
Noca_0362
TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: sco:SCO3558 morphological differentiation-associated protein.
 
    0.422
Noca_2615
PFAM: CHAP domain containing protein; KEGG: cch:Cag_1920 hypothetical protein.
  
     0.422
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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