STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0359Carbonate dehydratase; PFAM: carbonic anhydrase; KEGG: mag:amb0581 carbonic anhydrase. (261 aa)    
Predicted Functional Partners:
Noca_2952
PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative.
    
 0.916
rplR
LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.839
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.816
Noca_0355
PFAM: Na+/solute symporter; KEGG: sma:SAV7117 transmembrane transport protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.779
Noca_0356
KEGG: rha:RHA1_ro05042 hypothetical protein.
       0.773
Noca_0357
PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sma:SAV7115 regulatory protein.
       0.773
Noca_0358
Histidine kinase internal region; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: sma:SAV7118 putative two-component system sensor kinase.
       0.773
Noca_0360
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mpa:MAP3459 putative methyltransferase.
       0.678
Noca_2901
23S rRNA m(5)U-1939 methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM; KEGG: sma:SAV2389 putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
    0.468
Noca_3753
TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase; KEGG: ssn:SSO_0844 putative enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
    0.468
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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