STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0364PFAM: type II secretion system protein E; KEGG: sco:SCO3556 putative secretory protein. (387 aa)    
Predicted Functional Partners:
Noca_0365
PFAM: type II secretion system protein; KEGG: sco:SCO3555 integral membrane protein.
 
  
 0.919
Noca_0366
PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein.
 
  
 0.887
Noca_3118
PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein.
 
  
 0.873
Noca_3117
PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein.
 
  
 0.868
Noca_0363
KEGG: sco:SCO3557 septum site determining protein.
       0.814
Noca_3115
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
 
  
 0.795
Noca_1254
PFAM: type II secretion system protein; KEGG: fal:FRAAL1321 hypothetical protein.
 
  
 0.721
Noca_3114
PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain.
 
  
 0.670
Noca_0362
TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: sco:SCO3558 morphological differentiation-associated protein.
       0.591
Noca_3251
PFAM: TadE family protein; KEGG: bam:Bamb_1401 TadE family protein.
 
  
 0.557
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.