STRINGSTRING
Noca_0364 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0364" - Type II secretion system protein E in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0364Type II secretion system protein E (387 aa)    
Predicted Functional Partners:
Noca_0363
Septum site determining protein (348 aa)
              0.912
Noca_3117
Type II secretion system protein (326 aa)
 
   
  0.905
Noca_3118
Type II secretion system protein (304 aa)
 
   
  0.905
Noca_0365
Type II secretion system protein (258 aa)
 
          0.896
Noca_0366
Type II secretion system protein (240 aa)
              0.859
Noca_0362
HAD family hydrolase (289 aa)
              0.735
Noca_3115
Flp pilus assembly protein ATPase CpaE-like (395 aa)
 
          0.705
Noca_1254
Type II secretion system protein (312 aa)
 
          0.530
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (905 aa)
            0.450
Noca_2224
Type II secretion system protein (303 aa)
              0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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