STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0366PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein. (240 aa)    
Predicted Functional Partners:
Noca_0365
PFAM: type II secretion system protein; KEGG: sco:SCO3555 integral membrane protein.
 
  
 0.943
Noca_0364
PFAM: type II secretion system protein E; KEGG: sco:SCO3556 putative secretory protein.
 
  
 0.887
Noca_0363
KEGG: sco:SCO3557 septum site determining protein.
 
     0.884
Noca_3115
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
 
  
 0.732
Noca_0786
PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein.
 
  
 0.728
Noca_3114
PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain.
 
  
 0.715
Noca_1138
KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
    0.684
Noca_3117
PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein.
 
  
 0.643
Noca_1308
KEGG: sco:SCO2915 hypothetical protein.
  
     0.624
Noca_1923
PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor.
   
    0.622
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.