STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0374PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sma:SAV4618 rRNA or tRNA methyltransferase; Belongs to the methyltransferase superfamily. (486 aa)    
Predicted Functional Partners:
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.871
Noca_2946
KEGG: sco:SCO5843 hypothetical protein.
  
     0.642
Noca_1291
PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation.
 
 
   0.632
Noca_2458
KEGG: sco:SCO1602 hypothetical protein.
 
     0.575
Noca_3469
KEGG: sma:SAV5453 hypothetical protein.
  
     0.540
Noca_2959
KEGG: tfu:Tfu_2135 hypothetical protein.
  
     0.532
Noca_0373
KEGG: cch:Cag_1235 hypothetical protein.
       0.504
Noca_0387
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: pac:PPA0244 DNA polymerase III delta' subunit.
 
  
 0.486
Noca_4250
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV4028 hypothetical protein; Belongs to the GcvT family.
  
    0.484
Noca_2557
Hypothetical protein.
   
 0.480
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.