STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0396PFAM: DGPFAETKE family protein; KEGG: sma:SAV1196 hypothetical protein. (120 aa)    
Predicted Functional Partners:
Noca_4614
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; KEGG: sma:SAV1195 putative RNA polymerase ECF-subfamily sigma factor.
 
   
 0.786
Noca_2117
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: mxa:MXAN_5731 RNA polymerase sigma-70 factor, ECF subfamily.
 
   
 0.784
Noca_3869
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4452 RNA polymerase sigma factor.
 
   
 0.783
Noca_0397
KEGG: rha:RHA1_ro05190 hypothetical protein.
       0.447
Noca_1275
PFAM: bifunctional deaminase-reductase domain protein; KEGG: fal:FRAAL4597 putative DNA binding protein.
 
     0.413
Noca_0395
Hypothetical protein.
       0.410
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.