STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0399PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 hypothetical protein. (293 aa)    
Predicted Functional Partners:
Noca_0400
PFAM: Cupin 2, conserved barrel domain protein; KEGG: btk:BT9727_2719 conserved hypothetical protein, possible polyketide synthesis domain protein.
 
     0.900
Noca_0398
PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase.
     
 0.793
Noca_0401
Short-chain dehydrogenase/reductase SDR; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: syn:slr1208 short-chain alcohol dehydrogenase family.
  
    0.677
Noca_1187
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rxy:Rxyl_2236 antibiotic biosynthesis monooxygenase.
  
  
 0.598
Noca_0404
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: ret:RHE_PB00122 probable sugar ABC transporter, substrate-binding protein; TC 3.A.1.2.-.
 
  
 0.551
Noca_4343
Catalase domain protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
    0.527
Noca_3320
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: bxe:Bxe_C1270 ABC sugar transporter, periplasmic ligand binding protein; TC 3.A.1.2.-.
 
  
 0.453
Noca_2541
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: rha:RHA1_ro07186 transketolase; Belongs to the transketolase family.
  
  
 0.416
Noca_0402
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tte:TTE0461 Transcriptional regulator.
       0.415
Noca_3316
Dihydroxyacetone kinase DhaK subunit; PFAM: Dak kinase; KEGG: tfu:Tfu_1716 glycerone kinase.
 
     0.412
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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