STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0400PFAM: Cupin 2, conserved barrel domain protein; KEGG: btk:BT9727_2719 conserved hypothetical protein, possible polyketide synthesis domain protein. (129 aa)    
Predicted Functional Partners:
Noca_0399
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 hypothetical protein.
 
     0.900
Noca_0398
PFAM: class II aldolase/adducin family protein; KEGG: cpf:CPF_1051 L-fuculose phosphate aldolase.
  
    0.698
Noca_0401
Short-chain dehydrogenase/reductase SDR; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: syn:slr1208 short-chain alcohol dehydrogenase family.
     
 0.673
Noca_1873
KEGG: ecj:JW4343 conserved hypothetical protein.
 
     0.533
Noca_4219
PFAM: sugar transferase; KEGG: bth:BT0611 glycosyltransferase.
  
  
 0.459
Noca_4184
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: fal:FRAAL5661 dTDP-glucose 4,6-dehydratase transmembrane protein putative capsular polysaccharide biosynthesis protein.
  
  
 0.444
Noca_0402
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tte:TTE0461 Transcriptional regulator.
       0.421
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.