STRINGSTRING
Noca_0401 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0401" - Short chain dehydrogenase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0401Short chain dehydrogenase (652 aa)    
Predicted Functional Partners:
Noca_0399
Aldolase (293 aa)
 
          0.819
Noca_1655
Carbohydrate kinase (549 aa)
 
   
  0.754
Noca_3313
Carbohydrate kinase (503 aa)
 
   
  0.753
Noca_0400
Cupin (129 aa)
              0.736
Noca_3685
Carbohydrate kinase (510 aa)
 
   
  0.731
Noca_3397
Xylulokinase (465 aa)
       
  0.696
Noca_0398
Class II aldolase/adducin family protein (214 aa)
              0.675
Noca_3320
ABC sugar transporter, periplasmic ligand binding protein (348 aa)
 
     
  0.602
Noca_0086
Aldehyde dehydrogenase (509 aa)
   
   
    0.569
Noca_4199
Aldehyde dehydrogenase (522 aa)
   
   
    0.565
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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