STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0410KEGG: xom:XOO_4078 hypothetical protein. (170 aa)    
Predicted Functional Partners:
Noca_0409
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rxy:Rxyl_0706 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.788
Noca_0412
PFAM: DSBA oxidoreductase; KEGG: nfa:nfa52230 hypothetical protein.
       0.731
Noca_0411
PFAM: Vitamin K epoxide reductase; KEGG: blo:BL0088 narrowly conserved hypothetical transmembrane protein.
       0.723
Noca_0408
PFAM: Thrombospondin type 3 repeat; KEGG: ade:Adeh_3645 outer membrane protein, OmpA/MotB family.
  
    0.601
Noca_2922
Copper-translocating P-type ATPase; KEGG: atc:AGR_C_1708 copper-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.
       0.441
Noca_0413
Hypothetical protein.
       0.430
Noca_0316
PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein.
  
     0.425
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.