STRINGSTRING
Noca_0411 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0411" - Vitamin K epoxide reductase in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0411Vitamin K epoxide reductase (225 aa)    
Predicted Functional Partners:
Noca_0412
DSBA oxidoreductase (276 aa)
 
        0.929
Noca_0410
Hypothetical protein (170 aa)
              0.796
Noca_0409
Short-chain dehydrogenase/reductase SDR (248 aa)
              0.796
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (110 aa)
 
          0.626
Noca_0408
Thrombospondin type 3 repeat-containing protein (802 aa)
              0.602
Noca_1290
Hypothetical protein (107 aa)
   
          0.595
Noca_2907
Hypothetical protein (213 aa)
   
        0.540
Noca_3153
Integral membrane protein (194 aa)
   
          0.514
Noca_0413
Hypothetical protein (122 aa)
              0.508
Noca_3127
Hypothetical protein (88 aa)
   
          0.507
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (15%) [HD]