STRINGSTRING
Noca_0417 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0417" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0417Hypothetical protein (144 aa)    
Predicted Functional Partners:
Noca_3360
Regulatory protein TetR (208 aa)
   
          0.652
Noca_0418
Ribonuclease H (143 aa)
              0.642
Noca_0947
Pyridoxamine 5’-phosphate oxidase-like protein (154 aa)
   
          0.635
Noca_0566
Hypothetical protein (75 aa)
   
          0.557
Noca_0565
Phage integrase family protein (459 aa)
   
          0.542
Noca_4575
Extracellular solute-binding protein (297 aa)
   
          0.529
Noca_3311
Hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity (369 aa)
   
          0.488
Noca_0419
Endonuclease/exonuclease/phosphatase (366 aa)
              0.478
Noca_0999
Hypothetical protein (135 aa)
   
          0.475
Noca_1065
PGAP1 family protein (281 aa)
   
          0.465
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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