Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0424KEGG: tfu:Tfu_0355 putative integral membrane protein. (135 aa)    
Predicted Functional Partners:
Noca_0423
KEGG: fal:FRAAL1608 hypothetical protein; putative membrane protein.
       0.811
Noca_0425
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rha:RHA1_ro03045 probable NADH-dependent flavin oxidoreductase.
  
    0.714
Noca_0422
TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: fra:Francci3_0236 modification methylase, HemK family.
       0.578
Noca_0428
PFAM: beta-lactamase domain protein; KEGG: rha:RHA1_ro04761 hypothetical protein.
 
     0.455
Noca_1481
O(6)-alkylguanine repair protein YbaZ; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: tfu:Tfu_0522 hypothetical protein.
  
     0.454
Noca_3815
PFAM: Peptidoglycan-binding LysM; KEGG: fra:Francci3_3509 peptidoglycan-binding LysM.
  
   
 0.440
Noca_0426
PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein.
       0.419
Noca_2684
KEGG: rha:RHA1_ro02398 possible membrane protein.
  
     0.419
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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