STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0425PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rha:RHA1_ro03045 probable NADH-dependent flavin oxidoreductase. (392 aa)    
Predicted Functional Partners:
Noca_0424
KEGG: tfu:Tfu_0355 putative integral membrane protein.
  
    0.711
Noca_0423
KEGG: fal:FRAAL1608 hypothetical protein; putative membrane protein.
       0.705
Noca_0426
PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein.
 
     0.604
Noca_0422
TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: fra:Francci3_0236 modification methylase, HemK family.
       0.526
Noca_0302
KEGG: nfa:nfa48960 hypothetical protein.
 
  
 0.517
Noca_0427
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4362 short-chain dehydrogenase/reductase SDR.
 
  
 0.503
Noca_3954
PFAM: nuclear transport factor 2; KEGG: rha:RHA1_ro03609 steroid delta-isomerase.
 
    0.467
Noca_3635
KEGG: mbo:Mb3194 hypothetical protein.
  
     0.463
Noca_4417
PFAM: nuclear transport factor 2; KEGG: mpa:MAP0541c hypothetical protein.
 
     0.412
Noca_2769
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa4810 putative acyl-CoA dehydrogenase.
 
 
 0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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