STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0428PFAM: beta-lactamase domain protein; KEGG: rha:RHA1_ro04761 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Noca_0427
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_4362 short-chain dehydrogenase/reductase SDR.
   
   0.781
Noca_0426
PFAM: dihydrodipicolinate reductase; KEGG: rha:RHA1_ro02530 hypothetical protein.
       0.603
Noca_0618
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMa0257 probable methylamine.
 
 0.513
Noca_0424
KEGG: tfu:Tfu_0355 putative integral membrane protein.
 
     0.459
Noca_0338
PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase.
      
0.441
Noca_3036
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY4468 hypothetical protein.
   
 0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.