STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0432RNA polymerase, sigma subunit, ECF family; PFAM: DNA gyrase C-terminal repeat, beta-propeller; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO2742 putative sigma factor. (292 aa)    
Predicted Functional Partners:
Noca_0431
TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein.
 
  
 0.925
Noca_3171
PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein.
 
  
 0.698
Noca_0825
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
  
 0.621
Noca_0429
PFAM: GCN5-related N-acetyltransferase; KEGG: rha:RHA1_ro06613 hypothetical protein.
       0.546
Noca_0430
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: eli:ELI_09720 esterase.
       0.546
Noca_1676
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro01261 sigma factor, sigma 70 type, group 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.470
Noca_2549
Transcriptional regulator, ArsR family; PFAM: HMG-I and HMG-Y, DNA-binding domain protein; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6324 DNA-binding protein.
  
    0.450
Noca_1707
KEGG: tfu:Tfu_0549 anti-sigma factor.
 
 
 0.448
Noca_0433
TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO5646 putative solute binding lipoprotein.
       0.417
Noca_2629
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa16520 hypothetical protein.
  
    0.412
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.