Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_0434PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5647 ABC transporter integral membrane protein. (544 aa)    
Predicted Functional Partners:
Noca_0433
TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO5646 putative solute binding lipoprotein.
 
 
 0.993
Noca_0435
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO5648 ABC transporter ATP binding protein.
 
 0.993
Noca_2022
PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1.
  
  
 0.730
Noca_0436
KEGG: pca:Pcar_1759 hypothetical protein.
       0.721
Noca_3217
KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.578
Noca_2020
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fra:Francci3_1590 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.574
Noca_2071
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_5124 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.568
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.567
Noca_1067
PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_2797 ABC transporter related.
  
 
 0.503
Noca_0437
PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: tfu:Tfu_2239 hypothetical protein.
       0.487
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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