Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0455PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: fal:FRAAL6729 putative amino acid ABC transporter amino acid-binding protein. (318 aa)    
Predicted Functional Partners:
Noca_0453
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV7406 putative ABC transporter permease protein.
 
 0.999
Noca_0454
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL6728 putative ABC transporter permease protein.
 
 0.999
Noca_0452
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV7409 putative ABC transporter ATP-binding protein.
 
 0.998
Noca_4334
KEGG: pac:PPA0648 hypothetical protein.
  
    0.823
Noca_0934
KEGG: sma:SAV5684 hypothetical protein.
  
    0.667
Noca_4175
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: mpa:MAP3255 pyruvate decarboxylase; Belongs to the TPP enzyme family.
 
    0.545
Noca_2609
TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: mmc:Mmcs_1356 choline/carnitine/betaine transport; Belongs to the BCCT transporter (TC 2.A.15) family.
 
   
 0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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