STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0468KEGG: tfu:Tfu_2874 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
 
   
 0.684
Noca_3103
PFAM: flavin reductase domain protein, FMN-binding; KEGG: rpb:RPB_1003 flavin reductase-like, FMN-binding.
  
     0.676
Noca_1424
KEGG: sma:SAV5046 hypothetical protein.
   
    0.671
Noca_3585
KEGG: tfu:Tfu_2575 hypothetical protein.
  
     0.668
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
  
     0.659
Noca_4019
PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein.
 
     0.654
Noca_0308
KEGG: fal:FRAAL2961 hypothetical protein.
 
   
 0.650
Noca_0307
TIGRFAM: CD9/CD37/CD63 antigen; KEGG: sma:SAV2527 hypothetical protein.
  
     0.641
Noca_0467
HhH-GPD family protein; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sco:SCO3355 putative adenine glycosylase.
       0.637
Noca_3369
KEGG: dra:DR0603 cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domains protein.
  
     0.631
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.