STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0476PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO3347 conserved hypothetical protein. (262 aa)    
Predicted Functional Partners:
Noca_0475
PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 putative DNA-binding protein.
       0.838
Noca_3992
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sru:SRU_0347 oxidoreductase family, NAD-binding Rossmann fold domain protein.
  
  
 0.795
Noca_4211
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pac:PPA0136 NAD-dependent dehydrogenase.
  
  
 0.795
Noca_0477
PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro00946 transcriptional regulator, TetR family.
       0.791
Noca_1148
KEGG: sma:SAV2762 hypothetical protein.
  
    0.745
Noca_0478
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa19890 putative ABC transporter ATP-binding protein.
       0.700
Noca_0474
KEGG: sco:SCO3349 conserved hypothetical protein.
       0.685
Noca_0479
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component.
       0.649
Noca_0473
KEGG: pac:PPA0314 hypothetical protein.
 
     0.633
Noca_1707
KEGG: tfu:Tfu_0549 anti-sigma factor.
  
     0.583
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.