STRINGSTRING
Noca_0484 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0484" - DNA binding domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0484DNA binding domain-containing protein (67 aa)    
Predicted Functional Partners:
Noca_0486
NAD-dependent epimerase/dehydratase (359 aa)
              0.674
Noca_0487
Phospholipid/glycerol acyltransferase (375 aa)
              0.650
Noca_0483
Histone deacetylase superfamily protein (394 aa)
              0.552
Noca_0485
Hypothetical protein (33 aa)
              0.550
Noca_0694
Preprotein translocase subunit SecE (81 aa)
   
          0.452
Noca_0324
Metallophosphoesterase (320 aa)
   
          0.437
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline (267 aa)
              0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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