STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0491PFAM: AMP-dependent synthetase and ligase; KEGG: tth:TTC1065 long-chain-fatty-acid-CoA ligase. (515 aa)    
Predicted Functional Partners:
Noca_0492
PFAM: glutaredoxin; glutaredoxin 2; KEGG: sma:SAV4737 redoxin.
       0.837
Noca_1065
PFAM: PGAP1 family protein; KEGG: sus:Acid_1787 PGAP1 family protein.
    
  0.800
Noca_1162
PFAM: lipase, class 2; KEGG: rxy:Rxyl_2289 lipase, class 2.
    
  0.800
Noca_3617
PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO6790 putative long chain fatty acid coA ligase.
 
 
0.716
Noca_2987
PFAM: AMP-dependent synthetase and ligase; KEGG: fal:FRAAL1640 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase.
  
  
 
0.715
Noca_3113
PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV6069 putative acyl-CoA synthetase, long-chain-fatty-acid:CoA ligase.
 
 
0.707
Noca_1894
PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3602 AMP-dependent synthetase and ligase.
 
 
0.704
Noca_2618
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03747 probable long-chain-fatty-acid--CoA ligase.
 
 
0.701
Noca_4335
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03779 long-chain-fatty-acid--CoA ligase.
  
  
 
0.686
Noca_2616
PFAM: AMP-dependent synthetase and ligase; KEGG: cdi:DIP0386 acyl-CoA synthase.
  
  
 
0.680
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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