STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0502PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sco:SCO4473 putative cytochrome biogenesis related protein. (253 aa)    
Predicted Functional Partners:
Noca_0501
PFAM: Redoxin domain protein; KEGG: pac:PPA0325 hypothetical protein.
 
  
 0.963
Noca_0503
PFAM: ResB family protein; KEGG: sco:SCO4474 putative integral membrane protein.
 
  
 0.886
Noca_0504
PFAM: cytochrome c assembly protein; KEGG: pac:PPA0328 putative cytochrome c biogenesis protein.
 
  
 0.878
Noca_0500
PFAM: Phosphoglycerate mutase; KEGG: sma:SAV4796 phosphoglycerate mutase.
  
    0.873
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: sma:SAV4795 putative glutamate-1-semialdehyde 2,1-aminotransferase.
  
  
 0.836
Noca_2202
PFAM: Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein.
 
  
 0.792
Noca_2201
PFAM: ResB family protein; KEGG: sma:SAV4800 putative cytochrome c biogenesis membrane protein.
 
  
 0.754
Noca_2200
PFAM: cytochrome c assembly protein; KEGG: fra:Francci3_0513 cytochrome c assembly protein.
 
  
 0.741
Noca_1959
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE.
 
  
 0.682
Noca_2203
PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
  
 0.667
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.