STRINGSTRING
Noca_0563 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0563" - Phage integrase family protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0563Phage integrase family protein (361 aa)    
Predicted Functional Partners:
Noca_0562
Hypothetical protein (271 aa)
              0.859
Noca_0561
DNA binding domain-containing protein (59 aa)
              0.642
Noca_0560
Hypothetical protein (133 aa)
              0.642
Noca_0559
Hypothetical protein (76 aa)
              0.642
Noca_0558
Hypothetical protein (220 aa)
              0.642
Noca_1106
Restriction modification system DNA specificity subunit (161 aa)
   
   
  0.569
Noca_1105
Restriction modification system DNA specificity subunit (225 aa)
   
   
  0.569
Noca_2268
DNA protecting protein DprA (349 aa)
 
     
  0.478
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (289 aa)
   
        0.466
Noca_3226
Binding-protein-dependent transport system inner membrane protein (289 aa)
     
        0.457
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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