STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0586PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aor:AO090020000701 monoamine oxidase Pfam: FAD_binding_3 HI0933_like FAD_binding_2 GIDA DAO Amino_oxidase. (427 aa)    
Predicted Functional Partners:
Noca_0596
Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1872 carbon-monoxide dehydrogenase.
     
 0.902
Noca_0594
PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding.
     
  0.900
Noca_0595
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein.
     
  0.900
Noca_0585
Monoamine oxidase-like protein; KEGG: mxa:MXAN_4930 amine oxidase, flavin-containing.
 
     0.846
Noca_0483
PFAM: histone deacetylase superfamily; KEGG: tfu:Tfu_2707 putative acetoin utilization protein.
   
 0.659
Noca_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
    0.485
Noca_4569
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase.
 
  
 0.471
Noca_0138
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sco:SCO1167 helicase.
    
 0.467
Noca_1675
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx07490 ATP-dependent RNA helicase.
    
 0.467
Noca_3212
Putative helicase; KEGG: rha:RHA1_ro06668 possible helicase.
    
 0.467
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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