STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0590PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: mmp:MMP0887 hypothetical protein. (99 aa)    
Predicted Functional Partners:
Noca_0591
PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase.
       0.773
Noca_0592
PFAM: monooxygenase, FAD-binding; KEGG: bur:Bcep18194_A4962 hypothetical protein.
       0.668
Noca_0593
PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mmc:Mmcs_4601 carbon monoxide dehydrogenase subunit G.
       0.478
Noca_0589
KEGG: rha:RHA1_ro03774 hypothetical protein.
       0.458
Noca_0594
PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rpb:RPB_3113 molybdopterin dehydrogenase, FAD-binding.
       0.416
Noca_0595
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein.
       0.416
Noca_0596
Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rxy:Rxyl_1872 carbon-monoxide dehydrogenase.
       0.416
Noca_0597
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV4383 hydrolase.
       0.416
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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