STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0591PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase. (308 aa)    
Predicted Functional Partners:
Noca_0590
PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: mmp:MMP0887 hypothetical protein.
       0.773
Noca_3396
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
  
 0.753
Noca_0592
PFAM: monooxygenase, FAD-binding; KEGG: bur:Bcep18194_A4962 hypothetical protein.
 
   
 0.730
kynA
Tryptophan 2,3-dioxygenase apoenzyme / Tryptophan 2,3-dioxygenase holoenzyme; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
  
 0.589
Noca_1172
PFAM: protein of unknown function DUF849; KEGG: bcn:Bcen_4033 protein of unknown function DUF849.
 
    0.566
Noca_4085
PFAM: MmgE/PrpD family protein; KEGG: rxy:Rxyl_0368 MmgE/PrpD.
 
     0.531
Noca_4067
PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein.
 
     0.503
Noca_4226
3-keto-5-aminohexanoate cleavage enzyme; PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein.
  
    0.498
Noca_0040
PFAM: MmgE/PrpD family protein; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein.
 
     0.493
Noca_0593
PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mmc:Mmcs_4601 carbon monoxide dehydrogenase subunit G.
       0.478
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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