STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0601PFAM: phage integrase family protein; KEGG: sus:Acid_3311 phage integrase family protein. (332 aa)    
Predicted Functional Partners:
Noca_0600
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: eba:p2A227 putative integrase; Belongs to the 'phage' integrase family.
 
     0.942
Noca_0602
PFAM: phage integrase family protein; KEGG: eba:p2A229 putative integrase.
 
     0.940
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
     0.693
xerD
Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.682
Noca_2178
PFAM: phage integrase family protein; KEGG: pfo:Pfl_1025 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.631
Noca_1590
PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD.
  
     0.593
Noca_2265
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; Belongs to the 'phage' integrase family.
  
     0.481
Noca_2972
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase.
  
     0.481
Noca_0603
KEGG: mmc:Mmcs_3178 integrase, catalytic region.
     
 0.471
Noca_2486
PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_1200 conserved hypothetical protein.
  
  
 0.464
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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