STRINGSTRING
Noca_0601 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_0601" - Phage integrase family protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0601Phage integrase family protein (332 aa)    
Predicted Functional Partners:
Noca_0602
Phage integrase family protein (412 aa)
          0.984
Noca_0600
Phage integrase family protein (329 aa)
 
          0.971
xerD
Tyrosine recombinase XerD (318 aa)
 
 
  0.823
Noca_2178
Phage integrase family protein (303 aa)
 
 
 
  0.780
Noca_1590
Phage integrase family protein (198 aa)
   
          0.717
xerC
Phage integrase family protein (312 aa)
   
          0.670
Noca_1615
Phage integrase family protein (368 aa)
   
          0.629
Noca_1106
Restriction modification system DNA specificity subunit (161 aa)
   
   
  0.569
Noca_1105
Restriction modification system DNA specificity subunit (225 aa)
   
   
  0.569
Noca_0603
Integrase catalytic subunit (131 aa)
         
  0.554
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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