Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_0602PFAM: phage integrase family protein; KEGG: eba:p2A229 putative integrase. (412 aa)    
Predicted Functional Partners:
Noca_0601
PFAM: phage integrase family protein; KEGG: sus:Acid_3311 phage integrase family protein.
 
     0.940
Noca_0600
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: eba:p2A227 putative integrase; Belongs to the 'phage' integrase family.
 
    
0.837
Noca_2178
PFAM: phage integrase family protein; KEGG: pfo:Pfl_1025 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.770
Noca_1590
PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD.
  
     0.747
Noca_1724
PFAM: phage integrase family protein; KEGG: nfa:nfa7110 putative phage integrase; Belongs to the 'phage' integrase family.
  
     0.727
Noca_1615
PFAM: phage integrase family protein; KEGG: fal:FRAAL6356 putative tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.701
Noca_2317
PFAM: cell divisionFtsK/SpoIIIE; KEGG: pac:PPA1356 FtsK/SpoIIIE protein.
 
   
 0.660
Noca_2265
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase; Belongs to the 'phage' integrase family.
  
     0.613
Noca_2972
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase.
  
     0.613
Noca_1100
PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase; Belongs to the 'phage' integrase family.
  
     0.549
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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