Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Noca_0670KEGG: sco:SCO4636 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Noca_0671
PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein.
 
 
 0.994
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
     
 0.846
Noca_1991
Transcriptional regulator, CdaR family; KEGG: sco:SCO2386 hypothetical protein.
  
     0.648
Noca_1990
KEGG: tfu:Tfu_1973 acyl-carrier-protein S-malonyltransferase.
 
   
 0.622
Noca_2854
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: tfu:Tfu_1904 fatty acid oxidation complex alpha-subunit.
 
 0.595
Noca_4343
Catalase domain protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.581
Noca_0669
Hypothetical protein.
       0.565
Noca_1373
PFAM: acyl-ACP thioesterase; thioesterase superfamily protein; KEGG: sco:SCO2676 hypothetical protein.
 
   
 0.535
Noca_4562
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: mpa:MAP0790 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.
  
 0.526
Noca_2571
TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: lxx:Lxx11740 3-oxoacyl-[acyl-carrier protein] reductase.
 
 0.494
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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