STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0691PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: reu:Reut_B3761 ornithine cyclodeaminase/mu-crystallin. (339 aa)    
Predicted Functional Partners:
Noca_0690
Dihydrodipicolinate synthase/N-acetylneuraminate lyase-like protein; KEGG: jan:Jann_1453 dihydrodipicolinate synthetase.
 
   
 0.831
Noca_0692
PFAM: aldehyde dehydrogenase; KEGG: sme:SMa0260 GabD3 succinate-semialdehyde dehdyrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.788
Noca_1414
PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: eca:ECA2039 putative ornithine cyclodeaminase.
  
     0.773
Noca_1848
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro00338 probable sarcosine oxidase beta subunit.
 
  
 0.590
Noca_0689
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR.
       0.571
Noca_0082
PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV1734 oxidoreductase.
 
  
 0.477
Noca_1837
PFAM: FAD dependent oxidoreductase; KEGG: pfo:Pfl_0969 FAD dependent oxidoreductase.
 
  
 0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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