STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0700PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro02744 ABC superfamily, ATP-binding component. (333 aa)    
Predicted Functional Partners:
Noca_0701
PFAM: protein of unknown function DUF140; KEGG: sma:SAV5901 putative ABC-transporter integral membrane protein.
 0.999
Noca_0702
PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein.
 
 0.999
Noca_2825
PFAM: protein of unknown function DUF140; KEGG: sma:SAV5900 hypothetical protein.
 
 0.996
Noca_2826
PFAM: protein of unknown function DUF140; KEGG: sco:SCO2421 putative ABC-transporter integral membrane protein.
 0.995
Noca_0703
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein.
 
 
 0.983
Noca_0704
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5898 putative secreted protein.
 
 
 0.977
Noca_0707
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein.
 
 
 0.961
Noca_0708
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein.
 
 
 0.960
Noca_0705
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein.
 
 
 0.944
Noca_0706
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein.
 
 
 0.944
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.