Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_0701PFAM: protein of unknown function DUF140; KEGG: sma:SAV5901 putative ABC-transporter integral membrane protein. (261 aa)    
Predicted Functional Partners:
Noca_0700
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro02744 ABC superfamily, ATP-binding component.
 
 0.999
Noca_0703
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein.
 
 
 0.974
Noca_0704
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5898 putative secreted protein.
 
 
 0.971
Noca_0708
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein.
 
 
 0.960
Noca_0707
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein.
 
 
 0.935
Noca_0705
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5897 putative secreted protein.
 
 
 0.932
Noca_2819
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5894 putative secreted protein.
 
 
 0.931
Noca_0706
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5896 mce-related protein.
 
 
 0.926
Noca_2824
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5899 mce-related protein.
 
 
 0.893
Noca_2820
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sma:SAV5895 putative secreted protein.
 
 
 0.886
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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