STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0775PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tfu:Tfu_0833 alpha amylase, catalytic subdomain. (534 aa)    
Predicted Functional Partners:
Noca_1807
KEGG: rha:RHA1_ro06042 hypothetical protein.
 0.993
Noca_0056
PFAM: Glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: hma:rrnAC1479 sucrose-6-phosphate hydrolase.
 
 
 0.946
Noca_1808
KEGG: sma:SAV2803 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
  
 
0.935
Noca_3917
Broad-specificity cellobiase; PFAM: glycoside hydrolase, family 1; KEGG: tth:TT_P0042 beta-glycosidase.
 
 
 0.932
Noca_3263
Beta-glucosidase; PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sma:SAV2708 putative glycosyl hydrolase.
   
 
 0.931
Noca_3872
PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase.
 
 
 0.931
Noca_4587
Beta-glucosidase; PFAM: glycoside hydrolase, family 1; KEGG: sma:SAV5598 putative beta-glucosidase.
 
 
 0.931
Noca_0062
PFAM: PfkB domain protein; KEGG: rha:RHA1_ro02811 fructokinase.
 
 
 0.927
Noca_0197
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sco:SCO2226 bi-functional protein (secreted alpha-amylase/dextrinase).
 
  
 
0.925
Noca_1267
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dra:DR0933 alpha-amlyase.
  
  
 
0.924
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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