STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0779PFAM: iron dependent repressor; KEGG: sma:SAV3855 putative iron dependent regulatory protein. (228 aa)    
Predicted Functional Partners:
Noca_1934
Zinc uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; Belongs to the Fur family.
  
  
 0.750
Noca_3022
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit.
       0.673
Noca_0778
Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photolyase (DNA photolyase) (photoreactivating enzyme).
       0.640
Noca_4470
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mbo:Mb0085 probable oxidoreductase.
    
   0.597
Noca_3134
PFAM: cytochrome c oxidase, subunit III; KEGG: sco:SCO2151 cytochrome c oxidase subunit III.
      
 0.547
Noca_1291
PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation.
 
     0.527
Noca_2302
PFAM: dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: nfa:nfa16890 putative epimerase.
   
    0.520
Noca_1935
PFAM: ABC-3 protein; KEGG: sco:SCO2507 putative metal transport ABC transporter.
  
  
 0.516
Noca_1876
KEGG: sus:Acid_6922 natural resistance-associated macrophage protein.
  
  
 0.506
Noca_1774
Ferritin, Dps family protein; Iron-storage protein.
     
 0.505
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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