STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_0786PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Noca_0785
PFAM: large-conductance mechanosensitive channel; KEGG: pac:PPA0491 large conductance mechanosensitive channel.
       0.838
Noca_0787
TIGRFAM: putative regulatory protein, FmdB family; KEGG: mmc:Mmcs_4292 putative regulatory protein, FmdB.
 
  
 0.808
Noca_3115
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
  
  
 0.793
Noca_3121
PFAM: Flp/Fap pilin component.
  
  
 0.741
Noca_0366
PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein.
 
  
 0.728
Noca_0365
PFAM: type II secretion system protein; KEGG: sco:SCO3555 integral membrane protein.
 
  
 0.707
Noca_0363
KEGG: sco:SCO3557 septum site determining protein.
 
   
 0.674
Noca_0276
KEGG: tfu:Tfu_0025 hypothetical protein.
  
     0.673
Noca_1923
PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor.
   
    0.656
Noca_3118
PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein.
  
  
 0.655
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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