Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_0787TIGRFAM: putative regulatory protein, FmdB family; KEGG: mmc:Mmcs_4292 putative regulatory protein, FmdB. (93 aa)    
Predicted Functional Partners:
Noca_0786
PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein.
 
  
 0.745
Noca_0785
PFAM: large-conductance mechanosensitive channel; KEGG: pac:PPA0491 large conductance mechanosensitive channel.
       0.650
Noca_0788
PFAM: peptidase S45, penicillin amidase; KEGG: sco:SCO3184 putative penicillin acylase.
       0.577
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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